Cop9 Signalosome Complex Subunit 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cop9 Signalosome Complex Subunit 4
  Conformer 1
(PDB)
4d18 (D)
  Conformer 2
(PDB)
4d10 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 104 0.64   189 - 267   273 - 297
2 186 0.38   3 - 188
3 112 0.51   268 - 272   298 - 404

Sequence


           ________________________________________________________________________________________________________________________ 
 4d18(D) : MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW 
         :                                                                                                                          
 4d10(D) : MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________185_______________________________________________________ 
 4d18(D) : RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ 
         :                                                                                                                          
 4d10(D) : RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ 
           ______________________________________________________________185_______________________________________________________ 

           ________________________267______________________292____________________________________________________________________ 
 4d18(D) : QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 
         :                                                                                                                          
 4d10(D) : QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 
           ________________________267______________________292____________________________________________________________________ 

           ______________________________________________                                                                           
 4d18(D) : FETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ                                                                           
         :                                                                                                                          
 4d10(D) : FETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ                                                                           
           ______________________________________________                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.1
Translation
(A)
0.2
Closure
(%)
90.1
Bending Residues
( green )
  185 - 191
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
14.9
Translation
(A)
0.3
Closure
(%)
95.1
Bending Residues
( green )
  267 - 273
  292 - 303
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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