Creatine Kinase, M Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Creatine Kinase, M Chain
  Conformer 1
(PDB)
1u6r (A)
  Conformer 2
(PDB)
1m15 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 252 2.57   56 - 75   101 - 270   284 - 360
2 82 3.96   9 - 55   76 - 100   271 - 283

Sequence


           _____________________________________________________55__________________75______________________100____________________ 
 1u6r(A) : PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKT----DLNHENLKG 
         :                                                                                                                          
 1m15(A) : VDQATLDKLEAGFKKLQEASDCK---SLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVEN----LDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDIN--TLVG 
           _____________________________________________________53__________________69_______________________94____________________ 

           ________________________________________________________________________________________________________________________ 
 1u6r(A) : GDDLDP--HYVLSSRVRTGKSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHL 
         :                                                                                                                          
 1m15(A) : ---LDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLF-KEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHL 
           ________________________________________________________________________________________________________________________ 

           _________________________________270__________283_______________________________________________________________________ 
 1u6r(A) : RVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPK-FEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVV 
         :                                                                                                                          
 1m15(A) : RIISMQKGGDLKTVYKRLVTAVDNIESKL-----PFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQ 
           _________________________________259__________272_______________________________________________________________________ 

           ___________________________                                                                                              
 1u6r(A) : DGVKLMVEMEKKLEKGQSIDDMIPAQK                                                                                              
         :                                                                                                                          
 1m15(A) : DGILEMIKMEKAAA*************                                                                                              
           ___________________________                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.4
Translation
(A)
0.2
Closure
(%)
73.8
Bending Residues
( green )
  55 - 56
  75 - 76
  100 - 101
  270 - 271
  283 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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