Cyclin-Dependent Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclin-Dependent Kinase 2
  Conformer 1
(PDB)
1dm2 (A)
  Conformer 2
(PDB)
1qmz (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 190 1.04   59 - 62   87 - 142   148 - 292
2 58 1.18   4 - 32   63 - 86   143 - 147

Sequence


           _______________________________32____________________________62______________________86_________________________________ 
 1dm2(A) : *MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI---------pSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 
         :                                                                                                                          
 1qmz(A) : SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 
           _______________________________32____________________________62______________________86_________________________________ 

           ____________________142_________________________________________________________________________________________________ 
 1dm2(A) : SHRVLHRDLKPQNLLINTEGAIKLADFGL--------------vTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
         :                                                                                                                          
 1qmz(A) : SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYhEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
           ____________________142_________________________________________________________________________________________________ 

           __________________________________________________________                                                               
 1dm2(A) : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                               
         :                                                                                                                          
 1qmz(A) : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHL**                                                               
           __________________________________________________________                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.9
Translation
(A)
0.5
Closure
(%)
99.8
Bending Residues
( green )
  32 - 59
  62 - 63
  86 - 87
  142 - 143
  145 - 168
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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