Dbh Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dbh Protein
  Conformer 1
(PDB)
1k1s (A)
  Conformer 2
(PDB)
3bq2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 179 1.02   3 - 17   77 - 78   86 - 245   338 - 339
2 63 1.29   18 - 76   79 - 85
3 95 0.89   246 - 337   340 - 342

Sequence


           _______________17______________________________________________________76_______85______________________________________ 
 1k1s(A) : MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVSVYSGtSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGI 
         :                                                                                                                          
 3bq2(A) : MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGtSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGI 
           _______________17______________________________________________________76_______85______________________________________ 

           _______________________________________________________________________________________________________________________2 
 1k1s(A) : ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSK 
         :                                                                                                                          
 3bq2(A) : ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSK 
           _______________________________________________________________________________________________________________________2 

           45_________________________________________________________________________________________337_______                    
 1k1s(A) : IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN                    
         :                                                                                                                          
 3bq2(A) : IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN                    
           45_________________________________________________________________________________________337_______                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.8
Translation
(A)
-0.7
Closure
(%)
45.3
Bending Residues
( green )
  17 - 18
  76 - 79
  85 - 86
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
16.2
Translation
(A)
-0.8
Closure
(%)
48.8
Bending Residues
( green )
  245 - 246
  337 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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