3-Deoxy-D-Manno-2-Octulosonic Acid Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-D-Manno-2-Octulosonic Acid Transferase
  Conformer 1
(PDB)
2xcu (A)
  Conformer 2
(PDB)
2xci (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.26   3 - 170   251 - 258   278 - 282   297 - 303   335 - 349
2 144 0.29   171 - 250   259 - 277   283 - 296   304 - 334

Sequence


           ________________________________________________________________________________________________________________________ 
 2xcu(A) : HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAY 
         :                                                                                                                          
 2xci(C) : HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAY 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________166_________________________________________________________________________ 
 2xcu(A) : AKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEG 
         :                                                                                                                          
 2xci(C) : AKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEG 
           ____________________________________________166_________________________________________________________________________ 

           ________250_____258________________277__282___________296____303____________________________334__________________        
 2xcu(A) : DVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG        
         :                                                                                                                          
 2xci(C) : DVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG        
           ________250_____258________________277__282___________296____303____________________________334__________________        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.9
Translation
(A)
-0.1
Closure
(%)
7.8
Bending Residues
( green )
  166 - 173
  250 - 251
  258 - 259
  277 - 279
  282 - 283
  296 - 297
  303 - 304
  334 - 335
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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