D-Galactose/d-Glucose Binding Protein (/Ggbp)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Galactose/d-Glucose Binding Protein (/Ggbp)
  Conformer 1
(PDB)
2gbp  
  Conformer 2
(PDB)
2fw0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 154 0.43   111 - 255   296 - 304
2 147 0.45   4 - 110   256 - 295

Sequence


           _________________________________________________________________________________________________________108____________ 
 2gbp    : ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 
         :                                                                                                                          
 2fw0(A) : *DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 
           _________________________________________________________________________________________________________108____________ 

           ________________________________________________________________________________________________________________________ 
 2gbp    : DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
         :                                                                                                                          
 2fw0(A) : DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
           ________________________________________________________________________________________________________________________ 

           ___________254____________________________________293________________                                                    
 2gbp    : ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK                                                    
         :                                                                                                                          
 2fw0(A) : ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF***                                                    
           ___________254____________________________________293________________                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
34.9
Translation
(A)
2.2
Closure
(%)
98.7
Bending Residues
( green )
  108 - 113
  254 - 257
  293 - 304
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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