Elongation Factor 1-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor 1-Alpha
  Conformer 1
(PDB)
1jny (A)
  Conformer 2
(PDB)
3agj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 178 3.05   6 - 33   58 - 89   96 - 103   108 - 228
2 24 1.69   34 - 57
3 209 6.1   90 - 95   104 - 107   229 - 427

Sequence


           ____________________________33_____________________56______________________________88____________103____________________ 
 1jny(A) : KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE-----------mRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 
         :                                                                                                                          
 3agj(A) : KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 
           ____________________________33_____________________56______________________________88____________103____________________ 

           _____________________________________________________________________________________________________227________________ 
 1jny(A) : AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSI 
         :                                                                                                                          
 3agj(A) : AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSI 
           _____________________________________________________________________________________________________227________________ 

           ________________________________________________________________________________________________________________________ 
 1jny(A) : SGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVS 
         :                                                                                                                          
 3agj(A) : PGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________                                                 
 1jny(A) : KLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP******                                                 
         :                                                                                                                          
 3agj(A) : KLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKPAKVDIK                                                 
           ________________________________________________________________________                                                 

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
61.2
Translation
(A)
2.6
Closure
(%)
18.6
Bending Residues
( green )
  33 - 34
  56 - 65
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
92.7
Translation
(A)
-2.3
Closure
(%)
90.8
Bending Residues
( green )
  88 - 98
  103 - 108
  227 - 229
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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