Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1aip (A)
  Conformer 2
(PDB)
2xqd (Z)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 2.84   95 - 98   217 - 403
2 178 2.27   11 - 94   99 - 216

Sequence


           ________________________________________________________________________________82______________________________________ 
 1aip(A) : ********KPHVNVGTIGHVDHGKTTLTAALTYVTAAENP------------------------tAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
         :                                                                                                                          
 2xqd(Z) : AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
           ________________________________________________________________________________82______________________________________ 

           ____________________________________________________________________________________________215_________________________ 
 1aip(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
         :                                                                                                                          
 2xqd(Z) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
           ____________________________________________________________________________________________215_________________________ 

           ________________________________________________________________________________________________________________________ 
 1aip(A) : RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 
         :                                                                                                                          
 2xqd(Z) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________                                                                            
 1aip(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
         :                                                                                                                          
 2xqd(Z) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
           _____________________________________________                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
96.8
Translation
(A)
-1.6
Closure
(%)
91.1
Bending Residues
( green )
  82 - 99
  215 - 217
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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