Elongation Factor Tu (Ef-Tu)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu (Ef-Tu)
  Conformer 1
(PDB)
1d2e (D)
  Conformer 2
(PDB)
1exm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 4.46   57 - 139   143 - 251
2 191 2.21   140 - 142   252 - 439

Sequence


           _________________________________________________________________________________________139____________________________ 
 1d2e(D) : ******KPHVNVGTIGHVDHGKTTLTAAITKILA-EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLL 
         :                                                                                                                          
 1exm(A) : GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
           __________________________________________________________________________________________94____________________________ 

           _________________________________________________________________________________________251____________________________ 
 1d2e(D) : ARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ--RDPEL--G----LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTL 
         :                                                                                                                          
 1exm(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
           _________________________________________________________________________________________214____________________________ 

           ________________________________________________________________________________________________________________________ 
 1d2e(D) : ERGILKKGDECEFLGHSKNIR-TVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELA 
         :                                                                                                                          
 1exm(A) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________                                                                    
 1d2e(D) : MPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW                                                                    
         :                                                                                                                          
 1exm(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE**********                                                                    
           _____________________________________________________                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
80.2
Translation
(A)
3.8
Closure
(%)
82.1
Bending Residues
( green )
  139 - 143
  251 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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