Endochitinase (26 Kd)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endochitinase (26 Kd)
  Conformer 1
(PDB)
2baa (A)
  Conformer 2
(PDB)
2dkv (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 141 0.6   4 - 6   11 - 58   69 - 158
2 96 0.48   7 - 10   59 - 68   159 - 240

Sequence


           ________________________________________________6__10______________________________________________58________68_________ 
 2baa(A) : *******************************************SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPD 
         :                                                                                                                          
 2dkv(A) : EQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCdGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPD 
           _______________________________________________93__97_____________________________________________145_______155_________ 

           ______________________________________________________________________________158_______________________________________ 
 2baa(A) : GAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNI 
         :                                                                                                                          
 2dkv(A) : GPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNI 
           ______________________________________________________________________________245_______________________________________ 

           ______________________________________________                                                                           
 2baa(A) : INGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPFA                                                                           
         :                                                                                                                          
 2dkv(A) : VNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPFN                                                                           
           ______________________________________________                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
0.0
Closure
(%)
96.4
Bending Residues
( green )
  6 - 7
  10 - 11
  58 - 59
  68 - 69
  158 - 159
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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