Ferric Vibriobactin Abc Transporter, Periplasmic Ferric Vibriobactin-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferric Vibriobactin Abc Transporter, Periplasmic Ferric Vibriobactin-Binding Protein
  Conformer 1
(PDB)
3r5s (A)
  Conformer 2
(PDB)
3r5t (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 150 1.36   34 - 174   233 - 242
2 138 0.46   175 - 232   243 - 323

Sequence


           ________________________________________________________________________________________________________________________ 
 3r5s(A) : QNVWPRTFQNADGSITTIPSQPKRILSTAVTVTGTLLAIDAPVIASAATTQSTFFEQWRKLAELRQVKKLWPAGSVDLESVYVEQPDLIVVS-iGADSARDQIPLLQAIAPTILVDYSDQ 
         :                                                                                                                          
 3r5t(A) : *NVWPRTFQNADGSITTIPSQPKRILSTAVTVTGTLLAIDAPVIASAATTQSTFFEQWRKLAELRQVKKLWPAGSVDLESVYVEQPDLIVVSMIGADSARDQIPLLQAIAPTILVDYSDQ 
           ________________________________________________________________________________________________________________________ 

           _____________________173________________________________________________________232_____________________________________ 
 3r5s(A) : TWQSLAQQLGLATGLEEQAERTIHNFEQWTKQVRDVLDLPKGRANIVSYHGPGVVNAVAKAQSAHAQLLQSVGVVLEEPDPAWQAGSIVHRDFLRIHYEHLTQLQAETTFLIT-tDQQAQ 
         :                                                                                                                          
 3r5t(A) : TWQSLAQQLGLATGLEEQAERTIHNFEQWTKQVRDVLDLPKGRANIVSYHGPGVVNAVAKAQSAHAQLLQSVGVVLEEPDPAWQAGSIVHRDFLRIHYEHLTQLQAETTFLITMTDQQAQ 
           _____________________173________________________________________________________232_____________________________________ 

           _____________________________________________________________                                                            
 3r5s(A) : AFLHDPILKNLPSIQRKQVYGLGENSFRIDLFSAREIINSLLRRFAGEQAQSLV-pLEHHH                                                            
         :                                                                                                                          
 3r5t(A) : AFLHDPILKNLPSIQRKQVYGLGENSFRIDLFSAREIINSLLRRFAGEQAQSLVMPL****                                                            
           _____________________________________________________________                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.0
Translation
(A)
0.4
Closure
(%)
91.5
Bending Residues
( green )
  173 - 175
  232 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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