Ferrochelatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferrochelatase
  Conformer 1
(PDB)
1ak1 (A)
  Conformer 2
(PDB)
1c1h (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 278 0.57   7 - 12   14 - 23   43 - 86   91 - 308
2 24 0.57   13 - 13   24 - 42   87 - 90

Sequence


           ________12_________23_________________42__________________________________________86__90________________________________ 
 1ak1(A) : RKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSV 
         :                                                                                                                          
 1c1h(A) : **KMGLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSV 
           ________12_________23_________________42__________________________________________86__90________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ak1(A) : QSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDL 
         :                                                                                                                          
 1c1h(A) : QSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDL 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________                                                     
 1ak1(A) : FEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR                                                     
         :                                                                                                                          
 1c1h(A) : FEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR                                                     
           ____________________________________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.6
Translation
(A)
0.4
Closure
(%)
30.3
Bending Residues
( green )
  12 - 17
  23 - 24
  42 - 43
  86 - 87
  90 - 91
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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