Flavocytochrome C Fumarate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flavocytochrome C Fumarate Reductase
  Conformer 1
(PDB)
1d4c (A)
  Conformer 2
(PDB)
1qo8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 421 2.26   4 - 363   502 - 568
2 138 0.79   364 - 501

Sequence


           ________________________________________________________________________________________________________________________ 
 1d4c(A) : APEVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFD-MPFGGKWERKFVPVDADKAAQDKAIA 
         :                                                                                                                          
 1qo8(A) : *TPDMGSFHADMGSCQSCHA--KPIKVTDSETHENAQCKSCHGEYAELA--NDKLQFDPHNSHL-GDINCTSCHKGHEEPKFYCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1d4c(A) : AGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGAS 
         :                                                                                                                          
 1qo8(A) : AGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGAR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1d4c(A) : VNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLE 
         :                                                                                                                          
 1qo8(A) : VDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDID 
           ________________________________________________________________________________________________________________________ 

           _363____________________________________________________________________________________________________________________ 
 1d4c(A) : YIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQF 
         :                                                                                                                          
 1qo8(A) : WVQAHPTVGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAF 
           _359____________________________________________________________________________________________________________________ 

           __________________500______________________________________________________________________                              
 1d4c(A) : ERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD                              
         :                                                                                                                          
 1qo8(A) : GRADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQS-KPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHALD                              
           __________________496______________________________________________________________________                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
44.1
Translation
(A)
1.4
Closure
(%)
99.8
Bending Residues
( green )
  363 - 372
  500 - 502
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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