Glucosamine-6-Phosphate Isomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucosamine-6-Phosphate Isomerase
  Conformer 1
(PDB)
1ne7 (A)
  Conformer 2
(PDB)
1jt9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 159 0.69   6 - 136   145 - 145   155 - 200
2 78 0.95   3 - 5   137 - 144   146 - 154   201 - 258

Sequence


           ____5___________________________________________________________________________________________________________________ 
 1ne7(A) : MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA 
         :                                                                                                                          
 1jt9(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
           ____5___________________________________________________________________________________________________________________ 

           _____________136_____144_148_________________________________________________200________________________________________ 
 1ne7(A) : FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD 
         :                                                                                                                          
 1jt9(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTL-------------------pKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
           _____________136_____144_148_________________________________________________200________________________________________ 

           _________________________________________                                                                                
 1ne7(A) : EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQ                                                                                
         :                                                                                                                          
 1jt9(A) : EPSTMELKVKTLRYFNELEAENIKGL***************                                                                                
           _________________________________________                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.9
Translation
(A)
0.5
Closure
(%)
58.5
Bending Residues
( green )
  5 - 6
  136 - 137
  144 - 146
  148 - 155
  200 - 201
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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