Glucose 6-Phosphate 1-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucose 6-Phosphate 1-Dehydrogenase
  Conformer 1
(PDB)
1e7y (A)
  Conformer 2
(PDB)
1h9a (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 307 0.42   146 - 167   172 - 173   183 - 407   425 - 429   431 - 483
2 173 0.38   4 - 145   168 - 171   174 - 182   408 - 424   430 - 430

Sequence


           ________________________________________________________________________________________________________________________ 
 1e7y(A) : VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAP 
         :                                                                                                                          
 1h9a(A) : VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAP 
           ________________________________________________________________________________________________________________________ 

           ______________________145_________________165___171________182__________________________________________________________ 
 1e7y(A) : RFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRINHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNH 
         :                                                                                                                          
 1h9a(A) : RFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNH 
           ______________________145_________________165___171________182__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1e7y(A) : TMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGS 
         :                                                                                                                          
 1h9a(A) : TMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________406_______________424__429___________________________________________________ 
 1e7y(A) : EQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDA 
         :                                                                                                                          
 1h9a(A) : EQEACEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDA 
           ___________________________________________406_______________424__429___________________________________________________ 

           _____                                                                                                                    
 1e7y(A) : WVFKG                                                                                                                    
         :                                                                                                                          
 1h9a(A) : WVFKG                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.7
Translation
(A)
0.0
Closure
(%)
54.2
Bending Residues
( green )
  145 - 146
  165 - 168
  171 - 174
  182 - 183
  406 - 411
  424 - 425
  429 - 431
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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