Glutamate Racemase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Racemase
  Conformer 1
(PDB)
2ohg (A)
  Conformer 2
(PDB)
2ohv (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 91 0.45   7 - 38   89 - 98   209 - 258
2 36 0.3   53 - 88
3 110 0.34   99 - 208

Sequence


           ________________________________34____________________________________________________88________98______________________ 
 2ohg(A) : MDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMT 
         :                                                                                                                          
 2ohv(A) : MDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAp-----KKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMT 
           ________________________________34____________________________________________________88________98______________________ 

           _____________________________________________________________________________________208________________________________ 
 2ohg(A) : VASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQaVEHRFFTTAN 
         :                                                                                                                          
 2ohv(A) : VASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQaVEHRFFTTAN 
           _____________________________________________________________________________________208________________________________ 

           _______________________                                                                                                  
 2ohg(A) : PEIFQEIASIWLKQKINVEHVTL                                                                                                  
         :                                                                                                                          
 2ohv(A) : PEIFQEIASIWLKQKINVEHVTL                                                                                                  
           _______________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.7
Translation
(A)
-0.1
Closure
(%)
75.2
Bending Residues
( green )
  34 - 54
  88 - 89
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
5.1
Translation
(A)
0.3
Closure
(%)
38.7
Bending Residues
( green )
  98 - 100
  208 - 209
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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