Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
1euz (B)
  Conformer 2
(PDB)
1euz (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 214 0.23   18 - 33   36 - 191   347 - 369   372 - 373   384 - 384   402 - 417
2 198 0.42   6 - 17   34 - 35   192 - 346   370 - 371   374 - 383   385 - 401

Sequence


           ________13__________________33__________________________________________________________________________________________ 
 1euz(B) : IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERL 
         :                                                                                                                          
 1euz(C) : IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERL 
           ________13__________________33__________________________________________________________________________________________ 

           _________________________________________________________________191____________________________________________________ 
 1euz(B) : ARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS 
         :                                                                                                                          
 1euz(C) : ARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS 
           _________________________________________________________________191____________________________________________________ 

           ____________________________________________________________________________________________________346_________________ 
 1euz(B) : DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYY 
         :                                                                                                                          
 1euz(C) : DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYY 
           ____________________________________________________________________________________________________346_________________ 

           __368____________383_______________401__________________                                                                 
 1euz(B) : WTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGWVKK                                                                 
         :                                                                                                                          
 1euz(C) : WTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGWVKK                                                                 
           __368____________383_______________401__________________                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.7
Translation
(A)
-0.2
Closure
(%)
90.6
Bending Residues
( green )
  13 - 19
  33 - 36
  191 - 192
  346 - 347
  368 - 374
  383 - 385
  401 - 402
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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