6-Phosphofructokinase Isozyme 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Phosphofructokinase Isozyme 2
  Conformer 1
(PDB)
3uqd (D)
  Conformer 2
(PDB)
3uqd (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 180 0.77   45 - 54   115 - 118   129 - 135   137 - 137   139 - 139   141 - 150   154 - 160   168 - 307
2 125 0.49   3 - 44   55 - 114   119 - 128   136 - 136   138 - 138   140 - 140   151 - 153   161 - 167

Sequence


           __________________________________________44________54_________________________________________________________114_118__ 
 3uqd(D) : MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQ 
         :                                                                                                                          
 3uqd(B) : MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQ 
           __________________________________________44________54_________________________________________________________114_118__ 

           __125_______135____________150_______160____167_________________________________________________________________________ 
 3uqd(D) : LEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQ 
         :                                                                                                                          
 3uqd(B) : LEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQ 
           __125_______135____________150_______160____167_________________________________________________________________________ 

           _____________________________________________________________________                                                    
 3uqd(D) : VVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR                                                    
         :                                                                                                                          
 3uqd(B) : VVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR                                                    
           _____________________________________________________________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.9
Translation
(A)
-0.1
Closure
(%)
95.8
Bending Residues
( green )
  44 - 45
  54 - 55
  114 - 115
  118 - 119
  125 - 129
  135 - 141
  150 - 151
  153 - 154
  160 - 161
  167 - 168
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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