DynDom - Protein Domain Motions

4-Substituted Benzoates-Glutamate Ligase Gh3.12

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	4-Substituted Benzoates-Glutamate Ligase Gh3.12
Conformer 1 (PDB)	4epm (A)
Conformer 2 (PDB)	4ewv (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	328	2.63	11 - 420
2	140	1.11	421 - 573

Sequence

`________________________________________________________________________________________________________________________` `4epm(A) : *ETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVI` `:` `4ewv(A) : NETFEKQLKDLTSNVKSIQDNLLEEIITP---------------dKELFKKNV---sYEDIKPYLDRVVNGES----------------------qKMMPWNNKYLDNLTFIYDLRMQVI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4epm(A) : TKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSN` `:` `4ewv(A) : TKHVKGVE----mMFLFTKQE-------pARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQR------gSIFASVMVRAIEVLKNSWEELCSNIRSGHLSN` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4epm(A) : WVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKN` `:` `4ewv(A) : WVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFI--------` `________________________________________________________________________________________________________________________` `________________________________________________418_____________________________________________________________________` `4epm(A) :` `DVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDT-qFELDEEALS` `:` `4ewv(A) :` `----------gCTY-------aGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKqFELDEEALS` `________________________________________________418_____________________________________________________________________` `________________________________________________________________________________` `4epm(A) : TCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGA----yKTPRCIKSGKALQVLETCVVAKFFSI` `:` `4ewv(A) : TCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFSI` `________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	167.4
Translation (A)	0.5
Closure (%)	64.7
Bending Residues ( green )	418 - 422
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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