Antibody 19G2, Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Antibody 19G2, Beta Chain
  Conformer 1
(PDB)
1ub6 (L)
  Conformer 2
(PDB)
1a3l (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 114 0.76   5 - 113   172 - 176
2 94 0.48   114 - 171   177 - 212

Sequence


           ______________________________________________________________________________________________________________113_______ 
 1ub6(L) : *AALTQSPVSNPVTLGTSASISCRSTKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPNRFSSSGSGTDFTLRINTVEAEDVGVYYCAQNLELPPTFGAGTKLELKRADAAPTV 
         :                                                                                                                          
 1a3l(L) : DIVLTQAAFSNPVTLGASASISCRSSKSLLNSNGIIHMYWYLQKPGQSPQLLIYQMSKLASGAPDRFSGSGSGTDFTLRISRVEAEDVGVYYCAQNLELPYTFGGGTKLEIKRADAAPTV 
           ______________________________________________________________________________________________________________108_______ 

           ________________________________________________171__176_________________________________________                        
 1ub6(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNGYTCEATHKTSTSPIVKSF***                        
         :                                                                                                                          
 1a3l(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDTKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN                        
           ________________________________________________166__171_________________________________________                        

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.1
Translation
(A)
0.4
Closure
(%)
92.9
Bending Residues
( green )
  113 - 114
  171 - 172
  176 - 177
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: null

No Contacts

PyMOL Script

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