Creatine Kinase, M Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Creatine Kinase, M Chain
  Conformer 1
(PDB)
1u6r (B)
  Conformer 2
(PDB)
1u6r (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 1.43   8 - 103   132 - 176   192 - 218   224 - 237   255 - 288
2 155 1.59   104 - 131   177 - 191   219 - 223   238 - 254   289 - 378

Sequence


           ____________________________________________________________________________________________________103_________________ 
 1u6r(B) : PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDL 
         :                                                                                                                          
 1u6r(A) : PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDL 
           ____________________________________________________________________________________________________103_________________ 

           ________131__________________________________________176____________191________________________218__223___________237___ 
 1u6r(B) : DPHYVLSSRVRTGKSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISME 
         :                                                                                                                          
 1u6r(A) : DPHYVLSSRVRTGKSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISME 
           ________131__________________________________________176____________191________________________218__223___________237___ 

           ___________254_______________________________288________________________________________________________________________ 
 1u6r(B) : KGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMV 
         :                                                                                                                          
 1u6r(A) : KGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMV 
           ___________254_______________________________288________________________________________________________________________ 

           ____________________                                                                                                     
 1u6r(B) : EMEKKLEKGQSIDDMIPAQK                                                                                                     
         :                                                                                                                          
 1u6r(A) : EMEKKLEKGQSIDDMIPAQK                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.8
Translation
(A)
-0.3
Closure
(%)
99.9
Bending Residues
( green )
  103 - 104
  131 - 132
  176 - 177
  191 - 192
  218 - 219
  223 - 224
  237 - 238
  254 - 255
  288 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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