Folylpolyglutamate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Folylpolyglutamate Synthase
  Conformer 1
(PDB)
1jbw (A)
  Conformer 2
(PDB)
2gc5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 288 0.63   3 - 73   76 - 295
2 109 1.03   74 - 75   296 - 422

Sequence


           _____________________________________________________________________71_________________________________________________ 
 1jbw(A) : MNYTETVAYIHSFPRLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE 
         :                                                                                                                          
 2gc5(A) : MNYTETVAYIHSFPRLAK--dHRRILTLLHALGNPQQQGRYIHVTGTNGKSSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE 
           _____________________________________________________________________71_________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jbw(A) : FEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHaGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFT 
         :                                                                                                                          
 2gc5(A) : FEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHaGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFT 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________293____________________________________________________________________ 
 1jbw(A) : YEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFST 
         :                                                                                                                          
 2gc5(A) : YEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGI-----yAAMADRLTAAFST 
           _________________________________________________293____________________________________________________________________ 

           ______________________________________________________                                                                   
 1jbw(A) : VYLVPVPGT-----rLKDSWQEALAASLNDVPDQPIVITGSLYLASAVRQTLLG                                                                   
         :                                                                                                                          
 2gc5(A) : VYLVPVPGTPRALPrLKDSWQEALAASLNDVPDQPIVITGSLYLASAVRQTLLG                                                                   
           ______________________________________________________                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.4
Translation
(A)
-0.6
Closure
(%)
97.3
Bending Residues
( green )
  71 - 79
  293 - 297
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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