Glycerol-3-Phosphate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycerol-3-Phosphate Cytidylyltransferase
  Conformer 1
(PDB)
1coz (A)
  Conformer 2
(PDB)
1n1d (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 54 0.38   8 - 31   54 - 83
2 25 0.25   84 - 108

Sequence


           ________________________________________________________________________________82______________________________________ 
 1coz(A) : MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTT 
         :                                                                                                                          
 1n1d(A) : MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTT 
           ________________________________________________________________________________82______________________________________ 

           ______                                                                                                                   
 1coz(A) : KIKEEI                                                                                                                   
         :                                                                                                                          
 1n1d(A) : KIKEEI                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.1
Translation
(A)
-0.3
Closure
(%)
97.9
Bending Residues
( green )
  82 - 84
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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