Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Guanylate Kinase
  Conformer 1
(PDB)
2j41 (A)
  Conformer 2
(PDB)
2j41 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 92 1.23   7 - 34   99 - 101   108 - 195
2 70 0.7   35 - 98   102 - 107

Sequence


           _____________________________34____________________________________________________________96__101______________________ 
 2j41(A) : EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIF 
         :                                                                                                                          
 2j41(D) : *KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIF 
           _____________________________34____________________________________________________________96__101______________________ 

           ___________________________________________________________                                                              
 2j41(A) : LAPPS---kEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAK*********                                                              
         :                                                                                                                          
 2j41(D) : LAPPSeARKEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAKYRKMILEAK                                                              
           ___________________________________________________________                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.6
Translation
(A)
0.4
Closure
(%)
100.0
Bending Residues
( green )
  34 - 35
  96 - 99
  101 - 108
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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