H-2 Class I Histocompatibility Antigen, K-D Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen, K-D Alpha Chain
  Conformer 1
(PDB)
2fwo (A)
  Conformer 2
(PDB)
1vgk (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 178 0.6   6 - 183
2 86 0.66   184 - 269

Sequence


           ________________________________________________________________________________________________________________________ 
 2fwo(A) : GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWEEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 
         :                                                                                                                          
 1vgk(A) : GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWEEQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________183_________________________________________________________ 
 2fwo(A) : RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLRTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGT 
         :                                                                                                                          
 1vgk(A) : RDYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLRTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGT 
           ____________________________________________________________183_________________________________________________________ 

           ___________________________________                                                                                      
 2fwo(A) : FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWK                                                                                      
         :                                                                                                                          
 1vgk(A) : FQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW*                                                                                      
           ___________________________________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.6
Translation
(A)
-0.4
Closure
(%)
50.3
Bending Residues
( green )
  183 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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