Hypothetical Oxidoreductase Yqhd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Oxidoreductase Yqhd
  Conformer 1
(PDB)
1oj7 (C)
  Conformer 2
(PDB)
1oj7 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 48 0.58   7 - 12   19 - 27   37 - 57   135 - 138   173 - 175   250 - 254
2 218 0.42   0 - 6   13 - 18   176 - 249   255 - 385
3 114 0.42   28 - 36   58 - 134   145 - 172

Sequence


           ________6____12__16_________27_______36___________________57____________________________________________________________ 
 1oj7(C) : KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPW 
         :                                                                                                                          
 1oj7(D) : KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPW 
           ________6____12__16_________27_______36___________________57____________________________________________________________ 

           ______________134_138__________________________________175______________________________________________________________ 
 1oj7(C) : HILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 
         :                                                                                                                          
 1oj7(D) : HILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 
           ______________134_138__________________________________175______________________________________________________________ 

           _________249__254_______________________________________________________________________________________________________ 
 1oj7(C) : YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 
         :                                                                                                                          
 1oj7(D) : YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 
           _________249__254_______________________________________________________________________________________________________ 

           ______________________________                                                                                           
 1oj7(C) : KKLEEHGMTQLGENHDITLDVSRRIYEAAR                                                                                           
         :                                                                                                                          
 1oj7(D) : KKLEEHGMTQLGENHDITLDVSRRIYEAAR                                                                                           
           ______________________________                                                                                           

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.3
Translation
(A)
-0.2
Closure
(%)
88.8
Bending Residues
( green )
  6 - 7
  12 - 13
  16 - 19
  175 - 176
  249 - 250
  254 - 255
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
7.1
Translation
(A)
-0.1
Closure
(%)
92.4
Bending Residues
( green )
  27 - 30
  36 - 37
  57 - 59
  134 - 135
  138 - 149
  172 - 173
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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