Interferon Regulatory Factor 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Interferon Regulatory Factor 3
  Conformer 1
(PDB)
1zoq (B)
  Conformer 2
(PDB)
1qwt (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 159 1.12   202 - 345   366 - 380
2 20 3.96   346 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 1zoq(B) : *******LVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEvGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPD 
         :                                                                                                                          
 1qwt(B) : ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPD 
           ________________________________________________________________________________________________________________________ 

           __________________________________345_________________365______________________________________________________________  
 1zoq(B) : GEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASS*****************************************  
         :                                                                                                                          
 1qwt(B) : GEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES  
           __________________________________345_________________365______________________________________________________________  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
56.2
Translation
(A)
-0.4
Closure
(%)
13.0
Bending Residues
( green )
  345 - 346
  365 - 366
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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