Macrophage Mannose Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Macrophage Mannose Receptor
  Conformer 1
(PDB)
1egg (B)
  Conformer 2
(PDB)
1egg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 98 0.44   630 - 700   735 - 761
2 30 1.83   701 - 734

Sequence


           _________________________________________________________________________700______________________________733___________ 
 1egg(B) : IPKCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTM 
         :                                                                                                                          
 1egg(A) : ***CPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYG----gFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTM 
           _________________________________________________________________________700______________________________733___________ 

           ________________________                                                                                                 
 1egg(B) : SWNDINCEHLNNWICQIQKGQTPK                                                                                                 
         :                                                                                                                          
 1egg(A) : SWNDINCEHLNNWICQIQK*****                                                                                                 
           ________________________                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
40.7
Translation
(A)
-1.0
Closure
(%)
6.4
Bending Residues
( green )
  700 - 701
  733 - 735
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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