Major Envelope Protein E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Envelope Protein E
  Conformer 1
(PDB)
1ok8 (A)
  Conformer 2
(PDB)
1tg8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 266 4.59   3 - 5   7 - 288
2 105 3.96   6 - 6   289 - 392

Sequence


           __3_____________________________________________________________________________________________________________________ 
 1ok8(A) : MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFT 
         :                                                                                                                          
 1tg8(A) : MRCIGISNRDFVEGVS--sWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTDSRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFT 
           __3_____________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ok8(A) : CKKNMEGKIVQPENLEYTVVITPH--------------gKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTF 
         :                                                                                                                          
 1tg8(A) : CKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGA---gSNWIQKETLVTF 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________288________________________________________________________________________ 
 1ok8(A) : KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTE 
         :                                                                                                                          
 1tg8(A) : KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTE 
           _____________________________________________288________________________________________________________________________ 

           ___________________________________                                                                                      
 1ok8(A) : KDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK*                                                                                      
         :                                                                                                                          
 1tg8(A) : KDSPVNIEAEPPFGDSYIIIGVEPGQLKLDWFKKG                                                                                      
           ___________________________________                                                                                      

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
60.0
Translation
(A)
2.9
Closure
(%)
93.9
Bending Residues
( green )
  3 - 20
  288 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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