Bstyi

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bstyi
  Conformer 1
(PDB) 		1sdo (A)
  Conformer 2
(PDB) 		1vrr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 145 0.65   3 - 75   119 - 201
2 43 0.48   76 - 118

Sequence


           _________________________________________________________________________75______________________________________116____ 
 1sdo(A) : MRIVEVYSHLNGLEYIQVHLPHIWEEIQEIIVSIDAEACRT-----------iLYSPVALNEAFKEKLEAKGWKESRTNYYVTADPKLIRETLSLEPEEQKKVIEAAGKEALKSYNQTDF 
         :                                                                                                                          
 1vrr(A) : MRIVEVYSHLNGLEYIQVHLPHIWEEIQEIIVSIDAEACRTKESKEKTKQGQILYSPVALNEAFKEKLEAKGWKESRTNYYVTADPKLIRETLSLEPEEQKKVIEAAGKEALKSYNQTDF 
           _________________________________________________________________________75______________________________________116____ 

           ___________________________________________________________________________________                                      
 1sdo(A) : VKDRVAIEVQFGKYSFVAYDLFVKHMAFYVSDKIDVGVEILPMKELSKEMSSGISYYEGELYNVIRQGRGVPAVPLVLIGIAP                                      
         :                                                                                                                          
 1vrr(A) : VKDRVAIEVQFGKYSFVAYDLFVKHMAFYVSDKIDVGVEILPMKELSKEMSSGISYYEGELYNVIRQGRGVPAVPLVLIGIAP                                      
           ___________________________________________________________________________________                                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		34.7
Translation
(A) 		0.5
Closure
(%) 		100.0
Bending Residues
( green ) 		  108 - 110
  210 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

GLUTAMATE DEHYDROGENASE

PyMOL Script

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