C-Rel Proto-Oncogene Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name C-Rel Proto-Oncogene Protein
  Conformer 1
(PDB)
1gji (A)
  Conformer 2
(PDB)
1gji (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 169 0.34   9 - 176   182 - 182
2 102 0.28   177 - 181   183 - 279

Sequence


           ________________________________________________________________________________________________________________________ 
 1gji(A) : PYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVTKNEPYKPHPHDLVGKDCRDGYYEAEFGPERRVLSFQNLGIQCVKKKDLKESISLRISKKI 
         :                                                                                                                          
 1gji(B) : PYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVTKNEPYKPHPHDLVGKDCRDGYYEAEFGPERRVLSFQNLGIQCVKKKDLKESISLRISKKI 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________174________________________________________________________________________ 
 1gji(A) : NPFNVPEEQLHNIDEYDLNVVRLCFQAFLPDEHGNYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLDNWEAKGSFSQADVHRQVAIVFRTP 
         :                                                                                                                          
 1gji(B) : NPFNVPEEQLHNIDEYDLNVVRLCFQAFLPDEHGNYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLDNWEAKGSFSQADVHRQVAIVFRTP 
           _____________________________________________174________________________________________________________________________ 

           ___________________________________                                                                                      
 1gji(A) : PFLRDITEPITVKMQLRRPSDQEVSEPMDFRYLPD                                                                                      
         :                                                                                                                          
 1gji(B) : PFLRDITEPITVKMQLRRPSDQEVSEPMDFRYLPD                                                                                      
           ___________________________________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
-0.1
Closure
(%)
81.0
Bending Residues
( green )
  174 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download