Fab-Ysd1 Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab-Ysd1 Heavy Chain
  Conformer 1
(PDB)
1za3 (H)
  Conformer 2
(PDB)
1za3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.3   3 - 115
2 91 0.42   116 - 212

Sequence


           ________________________________________________________________________________________________________________________ 
 1za3(H) : EVQLVESGGGLVQPGGSLRLSCAASGFSIYSYSIHWVRQAPGKGLEWVASISPYSGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRYSSYYSYYYSSSSYSYAMDYWG 
         :                                                                                                                          
 1za3(B) : EVQLVESGGGLVQPGGSLRLSCAASGFSIYSYSIHWVRQAPGKGLEWVASISPYSGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRYSSYYSYYYSSSSYSYAMDYWG 
           ________________________________________________________________________________________________________________________ 

           ___110__________________________________________________________________________________________________                 
 1za3(H) : QGTLVTVSSASTKGPSVFPLAPSgTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK                 
         :                                                                                                                          
 1za3(B) : QGTLVTVSSASTKGPSVFPLAPSgTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK                 
           ___110__________________________________________________________________________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.9
Translation
(A)
-0.3
Closure
(%)
99.5
Bending Residues
( green )
  110 - 116
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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