Gamma-Glutamyltranspeptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Glutamyltranspeptidase
  Conformer 1
(PDB)
2dg5 (A)
  Conformer 2
(PDB)
2e0x (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 226 0.42   45 - 274   293 - 295
2 104 0.35   275 - 292   296 - 385

Sequence


           ________________________________________________________________________________________________________________________ 
 2dg5(A) : ********EEDVFHPVRAKQGvASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFlIRSKNGNTTAIDFREaPAKATRDfLDDQGNPDSKKSLTSHLASGTPGTVA 
         :                                                                                                                          
 2e0x(C) : APPVSYGVEEDVFHPVRAKQGvASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFlIRSKNGNTTAIDFREaPAKATRDfLDDQGNPDSKKSLTSHLASGTPGTVA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________________________274_ 
 2dg5(A) : GFSLALDKYGTpLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEiAENGPDEFYKGTIAEQIAQEqKNGGLITKEDLAAYKAVER 
         :                                                                                                                          
 2e0x(C) : GFSLALDKYGTpLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEiAENGPDEFYKGTIAEQIAQEqKNGGLITKEDLAAYKAVER 
           ____________________________________________________________________________________________________________________274_ 

           _____________292____________________________________________________________________________________________             
 2dg5(A) : TPISGDYRGYQVYSpPPSSGGIHIVQILNILENFDkKYGFGSADAqIaEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYE             
         :                                                                                                                          
 2e0x(C) : TPISGDYRGYQVYSpPPSSGGIHIVQILNILENFDkKYGFGSADAqIaEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYE             
           _____________292____________________________________________________________________________________________             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.7
Translation
(A)
-0.3
Closure
(%)
98.9
Bending Residues
( green )
  274 - 275
  292 - 299
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download