Glutamyl-Trna(gln) Amidotransferase Subunit E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamyl-Trna(gln) Amidotransferase Subunit E
  Conformer 1
(PDB)
2d6f (D)
  Conformer 2
(PDB)
2d6f (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 345 0.31   3 - 258   395 - 501
2 136 0.18   259 - 394

Sequence


           ________________________________________________________________________________________________________________________ 
 2d6f(D) : MDWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTrAAFEEAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTG 
         :                                                                                                                          
 2d6f(C) : MDWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPT--aFEEAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2d6f(D) : GFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGLGTIRQDLNISIRDGARVEVKGVQDLDLIPEI 
         :                                                                                                                          
 2d6f(C) : GFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGLGTIRQDLNISIRDGARVEVKGVQDLDLIPEI 
           ________________________________________________________________________________________________________________________ 

           _______258______________________________________________________________________________________________________________ 
 2d6f(D) : VEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVV 
         :                                                                                                                          
 2d6f(C) : VEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVV 
           _______258______________________________________________________________________________________________________________ 

           _______________________394______________________________________________________________________________________________ 
 2d6f(D) : MVAHERVTAENALREVIRRAEMAIQGVPEETRKALPDGNTQYLRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFdTTVIASLLAY 
         :                                                                                                                          
 2d6f(C) : MVAHERVTAENALREVIRRAEMAIQGVPEETRKALPDGNTQYLRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFdTTVIASLLAY 
           _______________________394______________________________________________________________________________________________ 

           __________________________________________                                                                               
 2d6f(D) : TLRELRREGHDVDGLGLDELRDAIKLLEVGKISKDALRDIVA                                                                               
         :                                                                                                                          
 2d6f(C) : TLRELRR***********************************                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
-0.1
Closure
(%)
20.4
Bending Residues
( green )
  258 - 262
  394 - 398
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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