Meso-Diaminopimelate D-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Meso-Diaminopimelate D-Dehydrogenase
  Conformer 1
(PDB)
1f06 (A)
  Conformer 2
(PDB)
1f06 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 231 0.56   3 - 143   171 - 183   242 - 318
2 85 0.56   144 - 170   184 - 241

Sequence


           ________________________________________________________________________________________________________________________ 
 1f06(A) : MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWD 
         :                                                                                                                          
 1f06(B) : MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWD 
           ________________________________________________________________________________________________________________________ 

           __________________141__________________________170_________________________________________________________________238__ 
 1f06(A) : PGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVVADAADHERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHT 
         :                                                                                                                          
 1f06(B) : PGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVVADAADHERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHT 
           __________________641__________________________670_________________________________________________________________738__ 

           ________________________________________________________________________________                                         
 1f06(A) : GMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLSPENLDDLIARDV                                         
         :                                                                                                                          
 1f06(B) : GMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLSPENLDDLIARDV                                         
           ________________________________________________________________________________                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
43.2
Translation
(A)
-0.7
Closure
(%)
99.1
Bending Residues
( green )
  141 - 146
  170 - 191
  238 - 242
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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