4M5.3 Anti-Fluorescein Single Chain Antibody Fragment

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4M5.3 Anti-Fluorescein Single Chain Antibody Fragment
  Conformer 1
(PDB)
2mpa (L)
  Conformer 2
(PDB)
1pz5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 141 0.89   3 - 119   142 - 149   170 - 177   201 - 209
2 70 0.75   120 - 141   150 - 169   178 - 200   210 - 214

Sequence


           ____________________________________________________________________________________________________________________119_ 
 2mpa(L) : DIVMTQTPLSLPVSLGDKASISCRSSQALVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVFFCSQSTHVPRTFGGGTKLEIKRADAAPTV 
         :                                                                                                                          
 1pz5(A) : DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQTTHVP-TFGGGTKLEIKRADAAPTV 
           ____________________________________________________________________________________________________________________114_ 

           __________________141_____149______________166________177____________________200______209__________                      
 2mpa(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                      
         :                                                                                                                          
 1pz5(A) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR***                      
           __________________136_____144______________161________172____________________195______204__________                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.6
Translation
(A)
0.3
Closure
(%)
30.6
Bending Residues
( green )
  119 - 120
  141 - 142
  149 - 151
  166 - 170
  177 - 178
  200 - 201
  209 - 210
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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