3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoglycerate Kinase
  Conformer 1
(PDB)
1qpg  
  Conformer 2
(PDB)
1fw8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 197 0.76   203 - 389   394 - 403
2 142 0.81   74 - 202   390 - 393   404 - 412

Sequence


           ________________________________________________________________________________________________________________________ 
 1qpg    : SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENL 
         :                                                                                                                          
 1fw8(A) : ***********************************************************************SKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENL 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________202______________________________________ 
 1qpg    : RYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT 
         :                                                                                                                          
 1fw8(A) : RYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT 
           _______________________________________________________________________________131______________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qpg    : FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSS 
         :                                                                                                                          
 1fw8(A) : FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSS 
           ________________________________________________________________________________________________________________________ 

           __________________________389___________________________________________________________________________________________ 
 1qpg    : AAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKK***************************************************************** 
         :                                                                                                                          
 1fw8(A) : AAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKKSLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGR 
           __________________________318___________________________________________________________________________________________ 

           ______                                                                                                                   
 1qpg    : ******                                                                                                                   
         :                                                                                                                          
 1fw8(A) : PNGERN                                                                                                                   
           ______                                                                                                                   

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.7
Translation
(A)
0.0
Closure
(%)
17.4
Bending Residues
( green )
  202 - 203
  389 - 406
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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