Acetylglutamate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetylglutamate Kinase
  Conformer 1
(PDB) 		2wxb (B)
  Conformer 2
(PDB) 		1gs5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 38 1.41   3 - 4   185 - 185   196 - 196   216 - 244   252 - 256
2 187 0.98   5 - 184   245 - 251
3 29 1.44   186 - 195   197 - 215

Sequence


           __3_____________________________________________________________________________________________________________________ 
 2wxb(B) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
         :                                                                                                                          
 1gs5(A) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
           __3_____________________________________________________________________________________________________________________ 

           ___________________________________________________________182__________195_________________215_________________________ 
 2wxb(B) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
         :                                                                                                                          
 1gs5(A) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
           ___________________________________________________________182__________195_________________215_________________________ 

           _244____251_______                                                                                                       
 2wxb(B) : EQLPALFNGMPMGTRILA                                                                                                       
         :                                                                                                                          
 1gs5(A) : EQLPALFNGMPMGTRILA                                                                                                       
           _244____251_______                                                                                                       

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 14.2 0.2 59.7   3 - 5   182 - 185   244 - 245   251 - 252 Bending Region Analysis
1 3 22.3 1.9 68.6   185 - 186   195 - 197   215 - 216 Bending Region Analysis
2 3 29.9 2.9 86.8   182 - 186 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts

PyMOL Script

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