Adp-Ribosylation Factor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adp-Ribosylation Factor 1
  Conformer 1
(PDB)
1o3y (B)
  Conformer 2
(PDB)
1s9d (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 3.43   22 - 64   84 - 175
2 20 2.33   21 - 21   65 - 83

Sequence


           ____21__________________________________57________________________83____________________________________________________ 
 1o3y(B) : GSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 
         :                                                                                                                          
 1s9d(A) : **MRILMVGLDAAGKTTILYKLK------tIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 
           ____21__________________________________57________________________83____________________________________________________ 

           ______________________________________________                                                                           
 1o3y(B) : AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK                                                                           
         :                                                                                                                          
 1s9d(A) : AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR***                                                                           
           ______________________________________________                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
35.9
Translation
(A)
0.1
Closure
(%)
35.9
Bending Residues
( green )
  21 - 22
  57 - 65
  83 - 84
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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