Aromatic Amino Acid Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aromatic Amino Acid Aminotransferase
  Conformer 1
(PDB)
2ay6 (A)
  Conformer 2
(PDB)
1ay5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 313 0.58   35 - 35   40 - 334   340 - 349   351 - 352   354 - 360   384 - 387   394 - 398
2 61 1.04   17 - 34   36 - 39   335 - 339   350 - 350   353 - 353   361 - 383   388 - 393   399 - 407

Sequence


           ____________________________34__________________________________________________________________________________________ 
 2ay6(A) : MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRV 
         :                                                                                                                          
 1ay5(B) : MLGNLKPQAPDKILALMGEF------gKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRV 
           ____________________________34__________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ay6(A) : FVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 
         :                                                                                                                          
 1ay5(B) : FVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________333___339_______349__________________________ 
 2ay6(A) : CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKE 
         :                                                                                                                          
 1ay5(B) : CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKE 
           ___________________________________________________________________________333___339_______349__________________________ 

           _____383______392_________________                                                                                       
 2ay6(A) : EFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV                                                                                       
         :                                                                                                                          
 1ay5(B) : EFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV                                                                                       
           _____383______392_________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.2
Translation
(A)
0.0
Closure
(%)
100.0
Bending Residues
( green )
  34 - 45
  333 - 335
  339 - 340
  349 - 361
  383 - 388
  392 - 399
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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