Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB) 		1art (A)
  Conformer 2
(PDB) 		1asn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 302 0.38   35 - 35   40 - 333   336 - 338   351 - 360   386 - 387
2 80 0.76   17 - 34   36 - 39   334 - 335   339 - 350   361 - 385   388 - 406

Sequence


           ________________________________________________________________________________________________________________________ 
 1rfm(G) : ILKPENEKKLIIDVLKKFGVPEEDAKITADVFVDADLKGFTSHGIGRFPQYITALKLGNINPKPDIKIVKESPATAVIDGDLGLGQVVGKKAeLAIKKAKNVGVGVVATRNANHFGIAGY 
         :                                                                                                                          
 1rfm(D) : ILKPENEKKLIIDVLKKFGVPEEDAKITADVFVDADLKGFTSHGIGRFPQYITALKLGNINPKPDIKIVKESPATAVIDGDLGLGQVVGKKAeLAIKKAKNVGVGVVATRNANHFGIAGY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________177_______________________________________219___________________________ 
 1rfm(G) : YSELAnQDiGITITNTEPAaPFGGKEKILGTNPIAIAFKGNKYKFSLDaTASIARGKILEALRKKIKIPEGCAVDKDGKPTTDPAKALEGCILPFGGPKGYGLALAIElSAIGGAEVGTK 
         :                                                                                                                          
 1rfm(D) : YSELAnQDiGITITNTEPAaPFGGKEKILGTNPIAIAFKGNKYKFSLDaTASIARGKILEALRKKIKIPEGCAVDKDGKPTTDPAKALEGCILPFGGPKGYGLALAIElSAIGGAEVGTK 
           ________________________________________________177_______________________________________219___________________________ 

           _______________________________________________________________________________________________                          
 1rfm(G) : VKGTANPEERCTKGDLFIAINPEFFgKEEFKRKVDELLDEIKNSEPAEGFEILIPGEIEERNKkRKDGFEIDKNLYNQLKEICNELGLNIEDYIE                          
         :                                                                                                                          
 1rfm(D) : VKGTANPEERCTKGDLFIAINPEFFgKEEFKRKVDELLDEIKNSEPAEGFEILIPGEIEERNKkRKDGFEIDKNLYNQLKEICNELGLNIEDYIE                          
           _______________________________________________________________________________________________                          

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.5
Translation
(A) 		0.8
Closure
(%) 		46.2
Bending Residues
( green ) 		  177 - 179
  219 - 220
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising
PROTEIN (UREASE ALPHA SUBUNIT)

PyMOL Script

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