Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin
  Conformer 1
(PDB) 		6aky (A)
  Conformer 2
(PDB) 		5uiw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 278 1.18   22 - 223   231 - 306
2 58 2.22   1001 - 230

Sequence


           ________________________________________________________________________________________________________________________ 
 6aky(A) : ****CQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVF 
         :                                                                                                                          
 5uiw(A) : TSEPCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVF 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________223________________________________ 
 6aky(A) : ALKARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKD 
         :                                                                                                                          
 5uiw(A) : ALKARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKD 
           _____________________________________________________________________________________223________________________________ 

           __________________1054__________________________________________________________________________________________         
 6aky(A) : IPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYL********         
         :                                                                                                                          
 5uiw(A) : IPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQKHI         
           __________________1054__________________________________________________________________________________________         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		65.7
Translation
(A) 		-0.8
Closure
(%) 		34.5
Bending Residues
( green ) 		  223 - 1002
  1054 - 233
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PHOSPHOSERINE PHOSPHATASE (PSP)

PyMOL Script

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