DynDom - Protein Domain Motions

Chitinase B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Chitinase B
Conformer 1 (PDB)	1e6n (A)
Conformer 2 (PDB)	1e6z (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	444	0.45	5 - 448
2	48	0.5	449 - 496

Sequence

`________________________________________________________________________________________________________________________` `1e6n(A) : *TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRA` `:` `1e6z(A) : STRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRA` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1e6n(A) : KFAQSCVRIMKDYGFDGVDIDWQYPQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYN` `:` `1e6z(A) : KFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYN` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1e6n(A) : ALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCAECVRDKDPRIASYRQLEQMLQGNYGYQRLWND` `:` `1e6z(A) : ALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND` `________________________________________________________________________________________________________________________` `___________________________________________________________________________439__________________________________________` `1e6n(A) : KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGA` `:` `1e6z(A) : KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGY` `___________________________________________________________________________439__________________________________________` `_________________` `1e6n(A) : ITSAPGSDSAWLKVGRV` `:` `1e6z(A) : ITSAPGSDSAWLKVGRV` `_________________`

Morph

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	18.5
Translation (A)	0.6
Closure (%)	64.4
Bending Residues ( green )	439 - 451
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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