Citrate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Citrate Synthase
  Conformer 1
(PDB) 		1iom (A)
  Conformer 2
(PDB) 		1ixe (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 20 0.84   20 - 27   257 - 268
2 279 1.17   5 - 19   28 - 223   271 - 280   317 - 374
3 65 0.55   224 - 256   285 - 316

Sequence


           _______________19______27_______________________________________________________________________________________________ 
 1iom(A) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
         :                                                                                                                          
 1ixe(B) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
           _______________19______27_______________________________________________________________________________________________ 

           _____________________________________________________________________________________________218________________________ 
 1iom(A) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
         :                                                                                                                          
 1ixe(B) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
           _____________________________________________________________________________________________218________________________ 

           ___________256________267_271__________________________________________316______________________________________________ 
 1iom(A) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKY 
         :                                                                                                                          
 1ixe(B) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAE----sKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKY 
           ___________256________267_271__________________________________________316______________________________________________ 

           ______________                                                                                                           
 1iom(A) : VGELDVPYVPLEAR                                                                                                           
         :                                                                                                                          
 1ixe(B) : VGELDVPYVPLEAR                                                                                                           
           ______________                                                                                                           

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.5
Translation
(A) 		0.4
Closure
(%) 		91.5
Bending Residues
( green ) 		  98 - 99
  116 - 117
  244 - 247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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