DynDom - Protein Domain Motions

Endo-Beta-N-Acetylglucosaminidase F2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Endo-Beta-N-Acetylglucosaminidase F2
Conformer 1 (PDB)	4nuy (A)
Conformer 2 (PDB)	4nuz (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	246	0.45	652 - 654 661 - 664 708 - 715 717 - 718 721 - 721 723 - 729 733 - 734 736 - 752 756 - 758 761 - 925 930 - 932 955 - 985
2	601	0.49	104 - 651 655 - 660 665 - 707 716 - 716 719 - 720 722 - 722 730 - 732 735 - 735 753 - 755 759 - 760
3	21	0.4	927 - 929 933 - 948 986 - 987

Sequence

`________________________________________________________________________________________________________________________` `4nuy(A) : ***PEKIPMKPLHGPLYGGYFRTWHDKTSDPTEKDKVNSMGELPKEVDLAFIFHDWTKDYSLFWKELATKHVPKLNKQGTRVIRTIPWRFLAGGDNSGIAEDTSKYPNTPEGNKALAKAI` `:` `4nuz(A) : MKIPEKIPMKPLHGPLYGGYFRTWHDKTSDPTEKDKVNSMGELPKEVDLAFIFHDWTKDYSLFWKELATKHVPKLNKQGTRVIRTIPWRFLAGGDNSGIAEDTSKYPNTPEGNKALAKAI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4nuy(A) : VDEYVYKYNLDGLDVDVEHDSIPKVDKKEDTAGVERSIQVFEEIGKLIGPKGVDKSRLFIMDSTYMADKNPLIERGAPYINLLLVQVYGSQGEKGGWEPVSNRPEKTMEERWQGYSKYIR` `:` `4nuz(A) : VDEYVYKYNLDGLDVQVEHDSIPKVDKKEDTAGVERSIQVFEEIGKLIGPKGVDKSRLFIMDSTYMADKNPLIERGAPYINLLLVQVYGSQGEKGGWEPVSNRPEKTMEERWQGYSKYIR` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4nuy(A) : PEQYMIGFSFYEENAQEGNLWYDINSRKDEDKANGINTDITGTRAERYARWQPKTGGVKGGIFSYAIDRDGVAHQPKKYAK-dATDNIFHSDYSVSKALKTVMLKDKSYDLIDEKDFPDK` `:` `4nuz(A) : PEQYMIGFSFYEENAQEGNLWYDINSRKDEDKANGINTDITGTRAERYARWQPKTGGVKGGIFSYAIDRDGVAHQPKKYAKkDATDNIFHSDYSVSKALKTVMLKDKSYDLIDEKDFPDK` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4nuy(A) : ALREAVMAQVGTRKGDLERFNGTLRLDNPAIQSLEGLNKFKKLAQLDLIGLSRITKLDRSVLPANMKPGKDTLETVLETYK----eEPATIPPVSLKVSGLTGLKELDLSGFDRETLAGL` `:` `4nuz(A) : ALREAVMAQVGTRKGDLERFNGTLRLDNPAIQSLEGLNKFKKLAQLDLIGLSRITKLDRSVLPANMKPGKDTLETVLETYKKDNKEEPATIPPVSLKVSGLTGLKELDLSGFDRETLAGL` `________________________________________________________________________________________________________________________` `___________________________________________________________________651______660_664_____________________________________` `4nuy(A) : DAATLTSLEKVDISGNKLDLAPGTENRQIFDTMLSTISNHVGSNEQTVKFDKQKPTGHYPDTYGKTSLRLPVANEKVDLQSQLLFGTVTNQGTLINSEADYKAYQNHKIAGRSFVDSNYH` `:` `4nuz(A) : DAATLTSLEKVDISGNKLDLAPGTENRQIFDTMLSTISNHVGSNEQTVKFDKQKPTGHYPDTYGKTSLRLPVANEKVDLQSQLLFGTVTNQGTLINSEADYKAYQNHKIAGRSFVDSNYH` `___________________________________________________________________651______660_664_____________________________________` `___707_____715___________729____________________752___758_______________________________________________________________` `4nuy(A) : YNNFKVSYENYTVKVTDSTLGTTTDKTLATDKEETYKVDFFSPADKTKAVHTAKVIVGDEKTMMVNLAEGATVIGGSADPVNARKVFDGQLGSETDNISLGWDSKQSIIFKLKEDGLIKH` `:` `4nuz(A) : YNNFKVSYENYTVKVTDSTLGTTTDKTLATDKEETYKVDFFSPADKTKAVHTAKVIVGDEKTMMVNLAEGATVIGGSADPVNARKVFDGQLGSETDNISLGWDSKQSIIFKLKEDGLIKH` `___707_____715___________729____________________752___758_______________________________________________________________` `_____________________________________________________________________________________________________925_929____________` `4nuy(A) : WRFFNDSARNPETTNKPIQEASLQIFNIKDYNLDNLLENPNKFDDEKYWITVDTYSAQGERATAFSNTLNNITSKYWRVVFDTKGDRYSSPVVPELQILGYPLPNADTIMKTVTTAKELS` `:` `4nuz(A) : WRFFNDSARNPETTNKPIQEASLQIFNIKDYNLDNLLENPNKFDDEKYWITVDTYSAQGERATAFSNTLNNITSKYWRVVFDTKGDRYSSPVVPELQILGYPLPNADTIMKTVTTAKELS` `_____________________________________________________________________________________________________925_929____________` `____948__________________________________985____` `4nuy(A) : QQKDKFSQKMLDELKIKEMALETSLNSKIFDVTAINANAGVLKDCIEK` `:` `4nuz(A) : QQKDKFSQKMLDELKIKEMALETSLNSKIFDVTAINANAGVLKDCIEK` `____948__________________________________985____`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	164.3
Translation (A)	1.0
Closure (%)	91.9
Bending Residues ( green )	109 - 110
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Bifunctional purine biosynthesis protein PURH

PyMOL Script

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