Fatty Acid-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fatty Acid-Binding Protein
  Conformer 1
(PDB)
1tvq (A)
  Conformer 2
(PDB)
1tw4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 68 0.83   5 - 38   90 - 123
2 52 0.75   4 - 4   39 - 89

Sequence


           ___4________________________________38_________________________________________________89_______________________________ 
 1tvq(A) : AFSGTWQVYAQENYEEFLKALALPEDLIKMARDIKPIVEIQQKGDDFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVTKSEKFSHEQEVKGNEMVETITFGGVTLIR 
         :                                                                                                                          
 1tw4(B) : AFSGTWQVYAQENYEEFLKALALPEDLIKMARDIKPIVEIQQKGDDFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVTKSEKFSHEQEVKGNEMVETITFGGVTLIR 
           ___4________________________________38_________________________________________________89_______________________________ 

           _____                                                                                                                    
 1tvq(A) : RSKRV                                                                                                                    
         :                                                                                                                          
 1tw4(B) : RSKRV                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.9
Translation
(A)
0.6
Closure
(%)
46.9
Bending Residues
( green )
  4 - 5
  38 - 39
  89 - 90
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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