Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
1bvu (E)
  Conformer 2
(PDB)
1bvu (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 206 0.37   8 - 11   14 - 16   183 - 185   189 - 348   362 - 372   378 - 402
2 205 0.26   5 - 7   12 - 13   17 - 182   186 - 188   349 - 361   373 - 377   403 - 415

Sequence


           __5____11___16__________________________________________________________________________________________________________ 
 1bvu(E) : QDPFEIAVKQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERL 
         :                                                                                                                          
 1bvu(D) : QDPFEIAVKQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERL 
           __5____11___16__________________________________________________________________________________________________________ 

           _________________________________________________________182___188______________________________________________________ 
 1bvu(E) : ARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVS 
         :                                                                                                                          
 1bvu(D) : ARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVS 
           _________________________________________________________182___188______________________________________________________ 

           _______________________________________________________________________________________________________348__________361_ 
 1bvu(E) : DTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNITGDY 
         :                                                                                                                          
 1bvu(D) : DTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNITGDY 
           _______________________________________________________________________________________________________348__________361_ 

           _______372___________________________402________________                                                                 
 1bvu(E) : WTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRGWIKK                                                                 
         :                                                                                                                          
 1bvu(D) : WTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRGWIKK                                                                 
           _______372___________________________402________________                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.7
Translation
(A)
-0.1
Closure
(%)
97.4
Bending Residues
( green )
  5 - 8
  11 - 14
  16 - 18
  182 - 183
  185 - 186
  188 - 189
  348 - 349
  361 - 362
  372 - 378
  402 - 403
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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