Hypothetical Trna/rrna Methyltransferase Yjfh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Trna/rrna Methyltransferase Yjfh
  Conformer 1
(PDB)
1gz0 (D)
  Conformer 2
(PDB)
1gz0 (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 156 0.48   80 - 241
2 76 0.95   3 - 79

Sequence


           __________________________________________________________________________________76____________________________________ 
 1gz0(D) : *********HsEiYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGAC 
         :                                                                                                                          
 1gz0(F) : SSGLVPRGSHsEiYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGAC 
           __________________________________________________________________________________76____________________________________ 

           ________________________________________________________________________________________________________________________ 
 1gz0(D) : LRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTrlQEENIWIVGTAGEADHTLYQSKtGRLALVgAEGEGrRLTREHCDELISIPaGSVSSLNVSVATGICLFEA 
         :                                                                                                                          
 1gz0(F) : LRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTrlQEENIWIVGTAGEADHTLYQSKtGRLALVgAEGEGrRLTREHCDELISIPaGSVSSLNVSVATGICLFEA 
           ________________________________________________________________________________________________________________________ 

           _____                                                                                                                    
 1gz0(D) : VRQRS                                                                                                                    
         :                                                                                                                          
 1gz0(F) : VRQRS                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.9
Translation
(A)
-1.8
Closure
(%)
5.0
Bending Residues
( green )
  76 - 88
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download