Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein
  Conformer 1
(PDB)
2obn (D)
  Conformer 2
(PDB)
2obn (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 209 0.23   109 - 109   133 - 345
2 122 0.34   8 - 108   110 - 132

Sequence


           ______________________________________________________________________________________________________108_______________ 
 2obn(D) : RLPLNQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEYKPQVLVIGIAPgGGIPDDYWIELKTALQAGsLVNGLHTPLANIPDLNALL 
         :                                                                                                                          
 2obn(C) : *LPLNQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEYKPQVLVIGIAPgGGIPDDYWIELKTALQAGsLVNGLHTPLANIPDLNALL 
           ______________________________________________________________________________________________________108_______________ 

           _____131________________________________________________________________________________________________________________ 
 2obn(D) : QPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDaIGKsTSLELHWAAKLRGWRSKFLATGQTGVlEGDGVALDAVRVDFAAGAVEQvrYGKNYDILHIEGQGSLLHPGSTATLPLI 
         :                                                                                                                          
 2obn(C) : QPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDaIGKsTSLELHWAAKLRGWRSKFLATGQTGVlEGDGVALDAVRVDFAAGAVEQvrYGKNYDILHIEGQGSLLHPGSTATLPLI 
           _____131________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________                      
 2obn(D) : RGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVqN                      
         :                                                                                                                          
 2obn(C) : RGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVqN                      
           ___________________________________________________________________________________________________                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.0
Translation
(A)
-0.4
Closure
(%)
55.3
Bending Residues
( green )
  108 - 110
  131 - 133
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download