Immunoglobulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin
  Conformer 1
(PDB)
2pcp (B)
  Conformer 2
(PDB)
2pcp (D)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 119 0.54   4 - 116   149 - 150
2 90 1.4   117 - 148   151 - 221

Sequence


           _____________________________________________________________________________________________________________________116 
 2pcp(B) : EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYIHWNKQSHGKSLEWIGYIYPNNGGNGYNHKFKGKATLTVDKSSSTAYMDVRTLTSEDSAVYYCGRSTWDDFDYWGQGTTLTVSSAKT 
         :                                                                                                                          
 2pcp(D) : EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYIHWNKQSHGKSLEWIGYIYPNNGGNGYNHKFKGKATLTVDKSSSTAYMDVRTLTSEDSAVYYCGRSTWDDFDYWGQGTTLTVSSAKT 
           _____________________________________________________________________________________________________________________116 

           ___________________________148_________________________________________________________________                          
 2pcp(B) : TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSPRPSETVTCNVAHPASSTKVDKKIV                          
         :                                                                                                                          
 2pcp(D) : TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSPRPSETVTCNVAHPASSTKVDKKIV                          
           ___________________________148_________________________________________________________________                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.6
Translation
(A)
0.0
Closure
(%)
89.9
Bending Residues
( green )
  116 - 117
  148 - 151
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download